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BIGPICTURE
European Digital Pathology Platform for development and validation of Artificial Intelligence
Digitisation is transforming the field of pathology. Developments in high-throughput slide scanning and data storage have revolutionised the Pathology field by enabling whole slide imaging (WSI) of histopathological specimens. Combined with the unprecedented possibilities of recent artificial intelligence (AI) techniques such as deep learning (DL) and hardware, we are now on the verge of accelerating “AI Pathology” and spur the use thereof across the entire value chain – from drug discovery towards clinical diagnostics. However, there are clearly several challenges that need to be overcome regarding large-scale development, validation and adoption of AI in Pathology. The BIGPICTURE project will build a European Digital Pathology Platform with the ultimate aim to accelerate the field of AI Pathology.
45
partners
69M €
funding
6
years
3 million
digital slides
About BIGPICTURE
Pathology is the cornerstone of the diagnosis of many diseases such as cancer, autoimmune diseases, and is also critical for the evaluation of the safety of new drugs. It’s based on the examination of tissue samples (glass slides) under the microscope. However, despite its pivotal role, it still relies heavily on the qualitative interpretation by a qualified pathologist.
While the microscope symbolizes the profession, the digitalisation of slides in recent years ignited a revolution: not only images can now be shared and accessed from distant locations, they can also be processed by computers. This opens the door for artificial intelligence (AI) applications to assist the pathologist to help studying disease, find better treatments and contribute to the 3Rs (replace, reduce, and refine animal use in research). However, the development of robust AI applications requires large amounts of data, which in the case of pathology means a huge collection of digital slides annotated with the medical data necessary for their interpretation. Sharing these has so far remained challenging due to the data storage capacity required to host a sufficiently large collection and to concerns regarding the confidential character of the medical information.
To allow the fast development of AI in pathology, the BIGPICTURE project aims to create the first European, ethical and GDPR-compliant (General Data Protection Regulation), quality-controlled platform, in which both large-scale data and AI algorithms will coexist. The BIGPICTURE platform will be developed in a sustainable and inclusive way by connecting communities of pathologists, researchers, AI developers, patients, and industry parties.
The project is divided into four main aspects that concern the large-scale collection of data. First, an infrastructure (hardware and software) must be created to store, share and process millions of images that can be gigabytes each. Second, legal and ethical constraints must be put in place to ensure adequate usage of data while fully respecting patient’s privacy and data confidentiality. Then, an initial set of 3 million digital slides from humans and laboratory animals will be collected and stored into the repository to provide data for the development of pathology AI tools. Finally, functionalities that aid the use of the database as well as the processing of images for diagnostic and research purposes will be developed.
BIGPICTURE is a public-private partnership funded by IMI, with representation from academic institutions, small- and medium-sized enterprises (SMEs), public organisations and pharmaceutical companies, together with a large network slide contributing partners.
BIGPICTURE started February 1st, 2021 and will run for 6 years. However, the platform is meant to last, and the consortium will elaborate sustainability plans to maintain and continue to develop the platform beyond this term.
Lygature in BIGPICTURE
Lygature will support BIGPICTURE with over-all program management, which will be critically important for BIGPICTURE in view of the large number of participants in the consortium. In this role, Lygature will benefit from extensive experience in previous multi-stakeholder collaborations such as the IMI European Lead Factory and APPROACH projects.
Next to this generic role, Lygature will also contribute specific data infrastructure expertise from its existing partnership in ongoing national and European projects. An important role in this domain will be to coordinate the overarching GDPR task force, which should guarantee a robust and consistent implementation of all data protection regulations.
Finally, Lygature will also get involved in the regulatory aspects of BIGPICTURE, in particular for the responsible introduction of artificial intelligence into the pathology domain. Existing relations with regulators as built up within previous IMI projects such as RADAR-CNS and ADAPT-SMART will be used to provide guidance to the project.
Lygature together with
Academic institutions: Radboud University Medical Center (NL), Linköping University (SE), Leeds Teaching Hospitals NHS Trust (UK), University Medical Centre Utrecht (NL), Uppsala University (SE, ELIXIR node), Haute Ecole Spécialisée de Suisse Occidentale (CH), Technical University Eindhoven (NL), University of Warwick (UK), Technical University of Munich (DE), Medical University Graz (AT), Institut Pasteur (FR), University of Liege (BE), University of Semmelweis (HU), National Cancer Institute (NL), Region Östergötland (SE), Medical University Vienna (AT), University of Marburg (DE), Helsingin ja Uudenmaan sairaanhoitopiirin kuntayhtymä (FI)
Pharmaceutical companies: Novartis Pharma AG (CH), Janssen Pharmaceutica NV (BE), Bayer AG (DE), Boehringer Ingelheim International GmbH (DE), Novo Nordisk A/S (DK), Pfizer (US), Genentech – Roche (US), Sanofi Aventis recherche et Développement (FR), Institut de Recherches Internationales Servier (FR), and UCB Biopharma SRL (BE).
Other public & private organisations: CSC – IT Center for Science Finland (FI, ELIXIR node), Biobanks and biomolecular resources research infrastructure (AT), Azienda Ospedaliera Per L’Emergenza Cannizzaro (IT), Fraunhofer-Gesellschaft zur Förderung der angewandten Forschung e.V.(DE), Deutsches Institut für Normung E.V. (DE), European Institute for Innovation through Health Data (BE), European Society of Pathology (BE), Digital pathology association (US), GBG Forschungs Gmbh (DE), ttopstart (NL), Sectra AB (SE), Cytomine SCRLFS (BE), Stichting Lygature (NL), Owkin (FR), Deciphex (IE), MedicalPhit (NL), Timelex (BE)
Acknowledgement of support
This project has received funding from the Innovative Medicines Initiative 2 Joint Undertaking under grant agreement No 945358. This Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program and EFPIA. www.imi.europe.eu
Project updates
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A new consortium of the EU Innovative Medicines Initiative (IMI) will establish the biggest database of pathology images to accelerate the development of artificial intelligence in medicine
To take AI development in pathology to the next level, a European consortium combining leading European research centres, hospitals as well as major pharmaceutical industries, is going to develop a repository for the sharing of pathology data. The 6-year, €70 million project called BIGPICTURE, will herald a new era in pathology.